IL_9C3H_018
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9C3H|1|L5|G|409, 9C3H|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9C3H_018 not in the Motif Atlas
- Homologous match to IL_8P9A_243
- Geometric discrepancy: 0.4952
- The information below is about IL_8P9A_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
9C3H|1|L5|G|387
9C3H|1|L5|A|388
9C3H|1|L5|A|389
9C3H|1|L5|C|390
*
9C3H|1|L5|G|401
9C3H|1|L5|A|402
9C3H|1|L5|G|403
9C3H|1|L5|U|404
9C3H|1|L5|U|405
9C3H|1|L5|C|406
9C3H|1|L5|A|407
9C3H|1|L5|A|408
9C3H|1|L5|G|409
9C3H|1|L5|A|410
9C3H|1|L5|G|411
9C3H|1|L5|G|412
9C3H|1|L5|G|413
9C3H|1|L5|C|414
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LE
- Large ribosomal subunit protein uL24
- Chain LU
- Large ribosomal subunit protein eL39
- Chain Lh
- Large ribosomal subunit protein uL22
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