IL_9C3H_021

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9C3H|1|L5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_021 not in the Motif Atlas

Geometric match to IL_8C3A_075

Geometric discrepancy: 0.3339

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

9C3H|1|L5|C|459
9C3H|1|L5|C|460
*
9C3H|1|L5|G|695
9C3H|1|L5|C|696
9C3H|1|L5|G|697

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein eL6

Chain Ll

Large ribosomal subunit protein eL28