IL_9C3H_066

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AGA*UA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_066 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.0674

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9C3H|1|L5|A|1749
9C3H|1|L5|G|1750
9C3H|1|L5|A|1751
*
9C3H|1|L5|U|1779
9C3H|1|L5|A|1780
9C3H|1|L5|PSU|1781

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

Large ribosomal subunit protein uL18

Chain L9

5S ribosomal RNA; 5S rRNA

Chain Lz

Large ribosomal subunit protein uL16