IL_9C3H_081

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

9C3H|1|L5|G|2343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_081 not in the Motif Atlas

Homologous match to IL_8P9A_285

Geometric discrepancy: 0.0498

The information below is about IL_8P9A_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9C3H|1|L5|C|2290
9C3H|1|L5|G|2291
9C3H|1|L5|C|2292
*
9C3H|1|L5|G|2342
9C3H|1|L5|G|2343
9C3H|1|L5|U|2344
9C3H|1|L5|G|2345

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LI

Large ribosomal subunit protein eL32

Chain La

Large ribosomal subunit protein uL15

Chain Ll

Large ribosomal subunit protein eL28