IL_9C3H_103

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9C3H|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_103 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0715

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9C3H|1|L5|C|2867
9C3H|1|L5|G|2868
9C3H|1|L5|U|2869
9C3H|1|L5|A|2870
9C3H|1|L5|A|2871
9C3H|1|L5|C|2872
*
9C3H|1|L5|G|2877
9C3H|1|L5|G|2878
9C3H|1|L5|A|2879
9C3H|1|L5|U|2880
9C3H|1|L5|A|2881
9C3H|1|L5|A|2882
9C3H|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain So

Small ribosomal subunit protein eS32