IL_9C3H_111

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9C3H|1|L5|A|3746, 9C3H|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_111 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0694

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9C3H|1|L5|U|3704
9C3H|1|L5|G|3705
*
9C3H|1|L5|U|3745
9C3H|1|L5|A|3746
9C3H|1|L5|A|3747
9C3H|1|L5|A|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SB

CCR4-NOT transcription complex subunit 3