IL_9C3H_114

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_114 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.137

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|PSU|3715
9C3H|1|L5|C|3716
9C3H|1|L5|A|3717
9C3H|1|L5|A2M|3718
9C3H|1|L5|A|3719
9C3H|1|L5|G|3720
9C3H|1|L5|U|3721
*
9C3H|1|L5|A|3732
9C3H|1|L5|A|3733
9C3H|1|L5|PSU|3734
9C3H|1|L5|G|3735
9C3H|1|L5|A|3736
9C3H|1|L5|A|3737
9C3H|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain Le

Large ribosomal subunit protein eL42

Chain Li

Large ribosomal subunit protein eL36