IL_9C3H_116

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9C3H|1|L5|A2M|3785, 9C3H|1|L5|C|3791, 9C3H|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_116 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0687

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9C3H|1|L5|C|3781
9C3H|1|L5|5MC|3782
9C3H|1|L5|A|3783
9C3H|1|L5|A|3784
9C3H|1|L5|A2M|3785
9C3H|1|L5|U|3786
9C3H|1|L5|G|3787
9C3H|1|L5|C|3788
9C3H|1|L5|C|3789
9C3H|1|L5|U|3790
9C3H|1|L5|C|3791
9C3H|1|L5|OMG|3792
*
9C3H|1|L5|OMC|3808
9C3H|1|L5|G|3809
9C3H|1|L5|C|3810
9C3H|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain So

Small ribosomal subunit protein eS32