IL_9C3H_128

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

9C3H|1|L5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_128 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.1666

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9C3H|1|L5|G|4347
9C3H|1|L5|A|4348
9C3H|1|L5|C|4349
9C3H|1|L5|C|4350
*
9C3H|1|L5|G|4364
9C3H|1|L5|C|4365

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL13

Chain La

Large ribosomal subunit protein uL15

Chain Le

Large ribosomal subunit protein eL42

Chain Lj

Large ribosomal subunit protein eL18