IL_9C3H_150

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9C3H|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_150 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2388

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9C3H|1|L5|G|4680
9C3H|1|L5|A|4681
9C3H|1|L5|U|4682
9C3H|1|L5|U|4683
9C3H|1|L5|A|4684
9C3H|1|L5|U|4685
*
9C3H|1|L5|A|4705
9C3H|1|L5|G|4706
9C3H|1|L5|A|4707
9C3H|1|L5|A|4708
9C3H|1|L5|U|4709
9C3H|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LY

Large ribosomal subunit protein uL13

Chain Lo

Large ribosomal subunit protein eL40