IL_9C3H_159

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(PSU)UCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_159 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1612

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9C3H|1|L5|PSU|4972
9C3H|1|L5|U|4973
9C3H|1|L5|C|4974
9C3H|1|L5|G|4975
*
9C3H|1|L5|C|4983
9C3H|1|L5|C|4984
9C3H|1|L5|U|4985
9C3H|1|L5|G|4986

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Ld

Large ribosomal subunit protein eL31

Chain Lh

Large ribosomal subunit protein uL22