IL_9C3H_162

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

9C3H|1|L5|G|5049

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_162 not in the Motif Atlas

Homologous match to IL_8P9A_359

Geometric discrepancy: 0.1765

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9C3H|1|L5|G|5000
9C3H|1|L5|PSU|5001
9C3H|1|L5|U|5002
*
9C3H|1|L5|G|5045
9C3H|1|L5|U|5046
9C3H|1|L5|C|5047
9C3H|1|L5|A|5048
9C3H|1|L5|G|5049
9C3H|1|L5|C|5050

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain Ld

Large ribosomal subunit protein eL31