IL_9C3H_183

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_183 not in the Motif Atlas

Homologous match to IL_8C3A_401

Geometric discrepancy: 0.1308

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9C3H|1|S2|OMU|116
9C3H|1|S2|C|117
9C3H|1|S2|C|118
9C3H|1|S2|PSU|119
9C3H|1|S2|U|120
9C3H|1|S2|OMU|121
*
9C3H|1|S2|A|343
9C3H|1|S2|U|344
9C3H|1|S2|U|345
9C3H|1|S2|C|346
9C3H|1|S2|G|347

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

Small ribosomal subunit protein eS8