IL_9C3H_192

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

9C3H|1|S2|OMU|428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_192 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.2215

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9C3H|1|S2|G|411
9C3H|1|S2|G|412
9C3H|1|S2|G|413
*
9C3H|1|S2|C|424
9C3H|1|S2|G|425
9C3H|1|S2|A|426
9C3H|1|S2|U|427
9C3H|1|S2|OMU|428
9C3H|1|S2|C|429

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SJ

Small ribosomal subunit protein uS4

Chain SX

Small ribosomal subunit protein uS12