IL_9C3H_261

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C3H_261 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1431

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9C3H|1|S2|C|1742
9C3H|1|S2|G|1743
9C3H|1|S2|G|1744
9C3H|1|S2|A|1745
9C3H|1|S2|U|1746
*
9C3H|1|S2|A|1788
9C3H|1|S2|G|1789
9C3H|1|S2|A|1790
9C3H|1|S2|A|1791
9C3H|1|S2|G|1792

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein eL24

Chain SG

Small ribosomal subunit protein eS6

Chain SI

Small ribosomal subunit protein eS8