IL_9C6J_003

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

9C6J|1|A|A|105, 9C6J|1|A|A|106, 9C6J|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_003 not in the Motif Atlas

Geometric match to IL_3IGI_003

Geometric discrepancy: 0.0917

The information below is about IL_3IGI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89312.1

Basepair signature

cWW-tSH-L-cWS-cWW-L

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|C|76
9C6J|1|A|A|77
9C6J|1|A|A|78
9C6J|1|A|G|79
*
9C6J|1|A|U|103
9C6J|1|A|G|104
9C6J|1|A|A|105
9C6J|1|A|A|106
9C6J|1|A|G|107
9C6J|1|A|G|108
9C6J|1|A|A|109
9C6J|1|A|A|110
9C6J|1|A|G|111

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains