IL_9C6J_006

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AUAUGAGG*UAAAU

Length

13 nucleotides

Bulged bases

9C6J|1|A|U|152, 9C6J|1|A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_006 not in the Motif Atlas

Geometric match to IL_3IGI_006

Geometric discrepancy: 0.1865

The information below is about IL_3IGI_006

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_77045.1

Basepair signature

cWW-L-tSW-L-tHW-cWW-L

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|A|149
9C6J|1|A|U|150
9C6J|1|A|A|151
9C6J|1|A|U|152
9C6J|1|A|G|153
9C6J|1|A|A|154
9C6J|1|A|G|155
9C6J|1|A|G|156
*
9C6J|1|A|U|221
9C6J|1|A|A|222
9C6J|1|A|A|223
9C6J|1|A|A|224
9C6J|1|A|U|225

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains