IL_9C6J_008

3D structure

PDB id

9C6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group IIC intron embedded with the TPP riboswitch

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UG*CUUUCUGCCAAAG

Length

15 nucleotides

Bulged bases

9C6J|1|A|A|207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C6J_008 not in the Motif Atlas

Geometric match to IL_3IGI_008

Geometric discrepancy: 0.3051

The information below is about IL_3IGI_008

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

IL_53787.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

9C6J|1|A|U|168
9C6J|1|A|G|169
*
9C6J|1|A|C|197
9C6J|1|A|U|198
9C6J|1|A|U|199
9C6J|1|A|U|200
9C6J|1|A|C|201
9C6J|1|A|U|202
9C6J|1|A|G|203
9C6J|1|A|C|204
9C6J|1|A|C|205
9C6J|1|A|A|206
9C6J|1|A|A|207
9C6J|1|A|A|208
9C6J|1|A|G|209

Current chains

Chain A

Group IIC intron embedded with the TPP riboswitch

Nearby chains