IL_9C8K_003

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

9C8K|1|1|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_003 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.3292

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9C8K|1|1|C|37
9C8K|1|1|A|38
9C8K|1|1|A|39
9C8K|1|1|A|40
*
9C8K|1|1|U|514
9C8K|1|1|G|515
9C8K|1|1|A|516
9C8K|1|1|C|517
9C8K|1|1|G|518

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein eS4

Chain J

uS4