IL_9C8K_014

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9C8K|1|1|U|361, 9C8K|1|1|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_014 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1534

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9C8K|1|1|U|359
9C8K|1|1|A|360
9C8K|1|1|U|361
9C8K|1|1|C|362
9C8K|1|1|A|363
9C8K|1|1|A|364
*
9C8K|1|1|U|396
9C8K|1|1|G|397
9C8K|1|1|A|398
9C8K|1|1|C|399
9C8K|1|1|C|400
9C8K|1|1|A|401
9C8K|1|1|C|402
9C8K|1|1|G|403

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain I

eS8

Chain L

uS17

Chain X

uS12