IL_9C8K_021

3D structure

PDB id

9C8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C8K_021 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2438

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9C8K|1|1|U|566
9C8K|1|1|C|567
9C8K|1|1|C|568
9C8K|1|1|A|569
*
9C8K|1|1|U|581
9C8K|1|1|U|582
9C8K|1|1|A|583
9C8K|1|1|A|584

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain J

uS4

Chain Y

Small ribosomal subunit protein eS24