IL_9C9P_005

3D structure

PDB id

9C9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 ternary complex, 14-nt sgRNA, State I (linear)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

9C9P|1|B|A|28, 9C9P|1|B|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9C9P_005 not in the Motif Atlas

Geometric match to IL_6AEG_001

Geometric discrepancy: 0.1747

The information below is about IL_6AEG_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.6

Basepair signature

cWW-cWW-L-R-cWW-L

Number of instances in this motif group

14

Unit IDs

9C9P|1|B|A|26
9C9P|1|B|G|27
9C9P|1|B|A|28
9C9P|1|B|G|29
*
9C9P|1|B|C|40
9C9P|1|B|A|41
9C9P|1|B|A|42
9C9P|1|B|G|43
9C9P|1|B|U|44
9C9P|1|B|U|45

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1