3D structure

PDB id
9CG6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
9CG6|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9CG6_029 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0859
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9CG6|1|A|U|605
9CG6|1|A|G|606
9CG6|1|A|A|607
9CG6|1|A|A|608
9CG6|1|A|A|609
9CG6|1|A|U|610
9CG6|1|A|C|611
9CG6|1|A|C|612
*
9CG6|1|A|G|628
9CG6|1|A|A|629
9CG6|1|A|A|630
9CG6|1|A|C|631
9CG6|1|A|U|632
9CG6|1|A|G|633

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain H
30S ribosomal protein S8
Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:


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