3D structure

PDB id
9CG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex (tRNA-fMet M1 + AUG start codon)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
AAGAAG*CCACU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9CG7_062 not in the Motif Atlas
Homologous match to IL_5J7L_063
Geometric discrepancy: 0.0992
The information below is about IL_5J7L_063
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_80231.1
Basepair signature
cWW-L-R-L-R-L-R-tHS-cWW
Number of instances in this motif group
2

Unit IDs

9CG7|1|A|A|1430
9CG7|1|A|A|1431
9CG7|1|A|G|1432
9CG7|1|A|A|1433
9CG7|1|A|A|1434
9CG7|1|A|G|1435
*
9CG7|1|A|C|1466
9CG7|1|A|C|1467
9CG7|1|A|A|1468
9CG7|1|A|C|1469
9CG7|1|A|U|1470

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S20
Chain a
Large subunit ribosomal RNA; LSU rRNA
Chain o
50S ribosomal protein L19

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