IL_9CL9_001

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GUUA*UAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUUA,UAAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CL9_001 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2303

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9CL9|1|CA|G|2
9CL9|1|CA|U|3
9CL9|1|CA|U|4
9CL9|1|CA|A|5
*
9CL9|1|CA|U|2898
9CL9|1|CA|A|2899
9CL9|1|CA|A|2900
9CL9|1|CA|C|2901

Current chains

Chain CA

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13