3D structure

PDB id
9CL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
WT 12C IM fraction, B-b3 with RluB bound
Experimental method
ELECTRON MICROSCOPY
Resolution
5.04 Å

Loop

Sequence
GGGG*CUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9CL9_006 not in the Motif Atlas
Geometric match to IL_4P3T_002
Geometric discrepancy: 0.3658
The information below is about IL_4P3T_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_01472.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

9CL9|1|CA|G|407
9CL9|1|CA|G|408
9CL9|1|CA|G|409
9CL9|1|CA|G|410
*
9CL9|1|CA|C|418
9CL9|1|CA|U|419
9CL9|1|CA|C|420

Current chains

Chain CA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.259 s
Application loaded.