IL_9CL9_007

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

9CL9|1|CA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CL9_007 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2638

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9CL9|1|CA|G|993
9CL9|1|CA|C|994
9CL9|1|CA|C|995
9CL9|1|CA|A|996
*
9CL9|1|CA|U|1159
9CL9|1|CA|G|1160
9CL9|1|CA|C|1161

Current chains

Chain CA

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21