IL_9CL9_009

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

GUCAUG*CAUGC

Length

11 nucleotides

Bulged bases

9CL9|1|CA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CL9_009 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3334

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9CL9|1|CA|G|1011
9CL9|1|CA|U|1012
9CL9|1|CA|C|1013
9CL9|1|CA|A|1014
9CL9|1|CA|U|1015
9CL9|1|CA|G|1016
*
9CL9|1|CA|C|1146
9CL9|1|CA|A|1147
9CL9|1|CA|U|1148
9CL9|1|CA|G|1149
9CL9|1|CA|C|1150

Current chains

Chain CA

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20