IL_9CL9_013

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9CL9|1|CA|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CL9_013 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2514

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9CL9|1|CA|C|1319
9CL9|1|CA|C|1320
9CL9|1|CA|A|1321
9CL9|1|CA|A|1322
9CL9|1|CA|C|1323
*
9CL9|1|CA|G|1331
9CL9|1|CA|G|1332
9CL9|1|CA|G|1333

Current chains

Chain CA

23S rRNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22