3D structure

PDB id
9CL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
WT 12C IM fraction, B-b3 with RluB bound
Experimental method
ELECTRON MICROSCOPY
Resolution
5.04 Å

Loop

Sequence
GGG*CC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9CL9_024 not in the Motif Atlas
Geometric match to IL_7KGA_003
Geometric discrepancy: 0.266
The information below is about IL_7KGA_003
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

9CL9|1|CA|G|2842
9CL9|1|CA|G|2843
9CL9|1|CA|G|2844
*
9CL9|1|CA|C|2874
9CL9|1|CA|C|2875

Current chains

Chain CA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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