IL_9CL9_029

3D structure

PDB id

9CL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT 12C IM fraction, B-b3 with RluB bound

Experimental method

ELECTRON MICROSCOPY

Resolution

5.04 Å

Loop

Sequence

CCUGCGAAG*UGGAGG

Length

15 nucleotides

Bulged bases

9CL9|1|CA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CL9_029 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.3735

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_64900.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

9CL9|1|CA|C|1207
9CL9|1|CA|C|1208
9CL9|1|CA|U|1209
9CL9|1|CA|G|1210
9CL9|1|CA|C|1211
9CL9|1|CA|G|1212
9CL9|1|CA|A|1213
9CL9|1|CA|A|1214
9CL9|1|CA|G|1215
*
9CL9|1|CA|U|1234
9CL9|1|CA|G|1235
9CL9|1|CA|G|1236
9CL9|1|CA|A|1237
9CL9|1|CA|G|1238
9CL9|1|CA|G|1239

Current chains

Chain CA

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20