IL_9CPA_011

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9CPA|1|2|U|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_011 not in the Motif Atlas

Geometric match to IL_8CRE_400

Geometric discrepancy: 0.1339

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24485.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

4

Unit IDs

9CPA|1|2|G|145
9CPA|1|2|G|146
9CPA|1|2|A|147
9CPA|1|2|U|148
9CPA|1|2|A|149
9CPA|1|2|A|150
9CPA|1|2|C|151
*
9CPA|1|2|G|167
9CPA|1|2|C|168
9CPA|1|2|U|169
9CPA|1|2|A|170
9CPA|1|2|A|171
9CPA|1|2|U|172
9CPA|1|2|A|173
9CPA|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24