IL_9CPA_020

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9CPA|1|2|U|351, 9CPA|1|2|C|389, 9CPA|1|2|C|390

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_020 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|U|349
9CPA|1|2|A|350
9CPA|1|2|U|351
9CPA|1|2|C|352
9CPA|1|2|A|353
9CPA|1|2|A|354
*
9CPA|1|2|U|386
9CPA|1|2|G|387
9CPA|1|2|A|388
9CPA|1|2|C|389
9CPA|1|2|C|390
9CPA|1|2|A|391
9CPA|1|2|C|392
9CPA|1|2|G|393

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS8

Chain N

Ribosomal protein S11

Chain Z

uS12