IL_9CPA_027

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_027 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3285

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9CPA|1|2|A|519
9CPA|1|2|U|520
9CPA|1|2|A|521
*
9CPA|1|2|U|543
9CPA|1|2|A|544
9CPA|1|2|A|545
9CPA|1|2|U|546

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein S9 (Predicted)

Chain h

ATP-dependent RNA helicase DHX29

Chain i

40S ribosomal protein S30