IL_9CPA_033
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GUCGCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9CPA|1|2|A|618, 9CPA|1|2|U|620, 9CPA|1|2|U|621
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_033 not in the Motif Atlas
- Geometric match to IL_8CRE_423
- Geometric discrepancy: 0.155
- The information below is about IL_8CRE_423
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|G|601
9CPA|1|2|U|602
9CPA|1|2|C|603
9CPA|1|2|G|604
9CPA|1|2|C|605
9CPA|1|2|A|606
9CPA|1|2|G|607
*
9CPA|1|2|C|614
9CPA|1|2|G|615
9CPA|1|2|G|616
9CPA|1|2|U|617
9CPA|1|2|A|618
9CPA|1|2|A|619
9CPA|1|2|U|620
9CPA|1|2|U|621
9CPA|1|2|C|622
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Ribosomal protein S3
- Chain Z
- uS12
- Chain h
- ATP-dependent RNA helicase DHX29
- Chain i
- 40S ribosomal protein S30
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