IL_9CPA_054

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9CPA|1|2|G|966

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_054 not in the Motif Atlas

Geometric match to IL_6UFM_001

Geometric discrepancy: 0.1992

The information below is about IL_6UFM_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

9CPA|1|2|G|948
9CPA|1|2|C|949
9CPA|1|2|U|950
9CPA|1|2|A|951
9CPA|1|2|G|952
*
9CPA|1|2|C|963
9CPA|1|2|U|964
9CPA|1|2|U|965
9CPA|1|2|G|966
9CPA|1|2|G|967
9CPA|1|2|A|968
9CPA|1|2|C|969
9CPA|1|2|C|970

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

Small ribosomal subunit protein uS11

Chain A

Eukaryotic translation initiation factor 2 subunit 1

Chain x

Small ribosomal subunit protein eS1