IL_9CPA_057
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9CPA|1|2|C|1149, 9CPA|1|2|U|1151, 9CPA|1|2|G|1153
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_057 not in the Motif Atlas
- Geometric match to IL_8CRE_439
- Geometric discrepancy: 0.1262
- The information below is about IL_8CRE_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9CPA|1|2|C|1087
9CPA|1|2|G|1088
9CPA|1|2|A|1089
*
9CPA|1|2|U|1148
9CPA|1|2|C|1149
9CPA|1|2|U|1150
9CPA|1|2|U|1151
9CPA|1|2|U|1152
9CPA|1|2|G|1153
9CPA|1|2|G|1154
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain N
- Ribosomal protein S11
- Chain P
- Ribosomal protein S13
- Chain Y
- Ribosomal protein S15a
- Chain Z
- uS12
Coloring options: