IL_9CPA_058
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_058 not in the Motif Atlas
- Geometric match to IL_3IGI_015
- Geometric discrepancy: 0.3322
- The information below is about IL_3IGI_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_95349.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9CPA|1|2|C|1094
9CPA|1|2|G|1095
9CPA|1|2|A|1096
9CPA|1|2|U|1097
9CPA|1|2|G|1098
9CPA|1|2|C|1099
*
9CPA|1|2|G|1125
9CPA|1|2|G|1126
9CPA|1|2|G|1127
9CPA|1|2|C|1128
9CPA|1|2|A|1129
9CPA|1|2|G|1130
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- uS2 (SA)
- Chain P
- Ribosomal protein S13
- Chain T
- eS17
- Chain b
- 40S ribosomal protein S26
- Chain c
- 40S ribosomal protein S27
- Chain x
- Small ribosomal subunit protein eS1
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