IL_9CPA_059
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_059 not in the Motif Atlas
- Geometric match to IL_8P9A_401
- Geometric discrepancy: 0.236
- The information below is about IL_8P9A_401
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_34520.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 61
Unit IDs
9CPA|1|2|G|1104
9CPA|1|2|C|1105
9CPA|1|2|G|1106
*
9CPA|1|2|C|1119
9CPA|1|2|C|1120
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- uS2 (SA)
- Chain D
- Eukaryotic translation initiation factor 3 subunit D
- Chain T
- eS17
- Chain c
- 40S ribosomal protein S27
- Chain k
- Eukaryotic translation initiation factor 3 subunit C
- Chain x
- Small ribosomal subunit protein eS1
Coloring options: