IL_9CPA_060

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_060 not in the Motif Atlas

Geometric match to IL_8P9A_428

Geometric discrepancy: 0.1187

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|G|1164
9CPA|1|2|G|1165
9CPA|1|2|A|1166
9CPA|1|2|G|1167
9CPA|1|2|U|1168
9CPA|1|2|A|1169
9CPA|1|2|U|1170
9CPA|1|2|G|1171
*
9CPA|1|2|U|1182
9CPA|1|2|G|1183
9CPA|1|2|A|1184
9CPA|1|2|A|1185
9CPA|1|2|A|1186
9CPA|1|2|C|1187

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

uS12

Chain l

eL41