IL_9CPA_063
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9CPA|1|2|C|1211, 9CPA|1|2|C|1212
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_063 not in the Motif Atlas
- Geometric match to IL_8CRE_445
- Geometric discrepancy: 0.1391
- The information below is about IL_8CRE_445
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9CPA|1|2|A|1210
9CPA|1|2|C|1211
9CPA|1|2|C|1212
9CPA|1|2|A|1213
*
9CPA|1|2|U|1676
9CPA|1|2|C|1677
9CPA|1|2|C|1678
9CPA|1|2|C|1679
9CPA|1|2|U|1680
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain H
- Small ribosomal subunit protein uS7
- Chain S
- uS9
- Chain b
- 40S ribosomal protein S26
- Chain d
- Ribosomal protein S28
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