IL_9CPA_077

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CPA_077 not in the Motif Atlas

Geometric match to IL_8CRE_457

Geometric discrepancy: 0.1183

The information below is about IL_8CRE_457

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9CPA|1|2|C|1359
9CPA|1|2|U|1360
9CPA|1|2|G|1361
*
9CPA|1|2|C|1370
9CPA|1|2|G|1371

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

uS2 (SA)

Chain T

eS17

Chain b

40S ribosomal protein S26