IL_9CPA_078
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 9CPA|1|2|U|1393
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_078 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3159
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9CPA|1|2|C|1391
9CPA|1|2|A|1392
9CPA|1|2|U|1393
9CPA|1|2|G|1394
9CPA|1|2|C|1395
*
9CPA|1|2|G|1443
9CPA|1|2|A|1444
9CPA|1|2|G|1445
9CPA|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- uS9
- Chain T
- eS17
- Chain W
- uS10
- Chain g
- RACK1
Coloring options: