IL_9CPA_099
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9CPA_099 not in the Motif Atlas
- Geometric match to IL_7A0S_070
- Geometric discrepancy: 0.3565
- The information below is about IL_7A0S_070
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9CPA|1|2|C|1737
9CPA|1|2|G|1738
9CPA|1|2|G|1739
9CPA|1|2|A|1740
9CPA|1|2|U|1741
*
9CPA|1|2|A|1782
9CPA|1|2|G|1783
9CPA|1|2|A|1784
9CPA|1|2|A|1785
9CPA|1|2|G|1786
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S6
- Chain K
- Small ribosomal subunit protein eS8
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