IL_9CXF_008

3D structure

PDB id

9CXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Rail RNA motif

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGAGAG*CGGGUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9CXF_008 not in the Motif Atlas

Geometric match to IL_6CB3_003

Geometric discrepancy: 0.1986

The information below is about IL_6CB3_003

Detailed Annotation

8x6 Sarcin-Ricin with bulged A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02349.4

Basepair signature

cWW-tSH-tWH-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9CXF|1|A|U|132
9CXF|1|A|G|133
9CXF|1|A|A|134
9CXF|1|A|G|135
9CXF|1|A|A|136
9CXF|1|A|G|137
*
9CXF|1|A|C|146
9CXF|1|A|G|147
9CXF|1|A|G|148
9CXF|1|A|G|149
9CXF|1|A|U|150
9CXF|1|A|A|151
9CXF|1|A|G|152

Current chains

Chain A

RNA (200-MER)

Nearby chains