#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 131-132-123-114-55-106-97-8
1 IL_6N2V_0016N2V0.10751AX. oryzae Mn riboswitch optimized constructG7G8G9G11U12A13G14*C88G89A90G91A92C93cWWtSHtWHcSHntWHtHScWW
2 IL_4Y1M_0064Y1M0.000018x6 Sarcin-Ricin with bulged A; G-bulgeBE. coli yybP-ykoY riboswitchG8G9G10G12U13A14G15*C96G97A98G99A100C101
3 IL_6CB3_0036CB30.143018x6 Sarcin-Ricin with bulged A; G-bulgeBRNA (99-MER)G7G8G9G11U12A13G14*C91A92A93G94A95C96

3D structures

Complete motif including flanking bases
SequenceCounts
GGGAGUAG*CGAGAC2
GGGAGUAG*CAAGAC1
Non-Watson-Crick part of the motif
SequenceCounts
GGAGUA*GAGA2
GGAGUA*AAGA1

Release history

Release3.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.89
Date2019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-09
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8x6 Sarcin-Ricin with bulged A; G-bulge (2)
  • (1)
  • Basepair signature
    cWW-tSH-tWH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.11 | Avg 0.09 | Max 0.17
    Help

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