IL_9D0I_049

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

9D0I|1|1A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0I_049 not in the Motif Atlas

Geometric match to IL_9DFE_053

Geometric discrepancy: 0.0882

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52564.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9D0I|1|1A|U|1415
9D0I|1|1A|G|1416
*
9D0I|1|1A|C|1582
9D0I|1|1A|A|1583
9D0I|1|1A|C|1584
9D0I|1|1A|A|1586
9D0I|1|1A|A|1587

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains