IL_9D0J_295

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

9D0J|1|2a|U|244, 9D0J|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D0J_295 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0752

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9D0J|1|2a|C|242
9D0J|1|2a|A|243
9D0J|1|2a|U|244
9D0J|1|2a|C|245
9D0J|1|2a|A|246
9D0J|1|2a|G|247
*
9D0J|1|2a|C|277
9D0J|1|2a|G|278
9D0J|1|2a|A|279
9D0J|1|2a|C|280
9D0J|1|2a|G|281
9D0J|1|2a|A|282
9D0J|1|2a|C|283
9D0J|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17