IL_9D7R_040
3D structure
- PDB id
- 9D7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Fva1 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9D7R|1|1A|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D7R_040 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.0721
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9D7R|1|1A|G|1031
9D7R|1|1A|A|1032
9D7R|1|1A|U|1033
9D7R|1|1A|G|1034
*
9D7R|1|1A|C|1121
9D7R|1|1A|G|1122
9D7R|1|1A|C|1123
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1H
- 50S ribosomal protein L6
- Chain 1Q
- 50S ribosomal protein L16
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