IL_9D7S_052

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

9D7S|1|1A|C|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_052 not in the Motif Atlas

Homologous match to IL_9DFE_053

Geometric discrepancy: 0.1782

The information below is about IL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00881.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9D7S|1|1A|U|1415
9D7S|1|1A|G|1416
*
9D7S|1|1A|C|1582
9D7S|1|1A|A|1583
9D7S|1|1A|C|1584
9D7S|1|1A|A|1586
9D7S|1|1A|A|1587

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains